Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs13015287 | chr2:67488701 | C/T | 1.14E-7 | 502 | 36.95 | 37.75 | 2.03 | KM Plot |
KIRC | rs13015319 | chr2:67597525 | T/A | 2.25E-7 | 507 | 37.35 | 37.73 | 2.03 | KM Plot |
KIRC | rs13018272 | chr2:67561068 | G/A | 2.74E-7 | 504 | 37.33 | 37.67 | 2.03 | KM Plot |
KIRC | rs13026513 | chr2:67611527 | T/C | 2.09E-7 | 508 | 37.33 | 37.77 | 2.03 | KM Plot |
KIRC | rs13030037 | chr2:67633342 | A/G | 2.2E-7 | 507 | 37.33 | 37.7 | 2.03 | KM Plot |
KIRC | rs13030211 | chr2:67633315 | C/A | 2.2E-7 | 507 | 37.33 | 37.7 | 2.03 | KM Plot |
KIRC | rs13059037 | chr3:48287879 | A/G | 1.79E-5 | 495 | 37.73 | 37.6 | 21.12 | KM Plot |
KIRC | rs13060020 | chr3:48372646 | C/T | 1.05E-5 | 492 | 37.5 | 38.83 | 21.73 | KM Plot |
KIRC | rs13061269 | chr3:48373343 | C/T | 5.71E-6 | 490 | 37.53 | 39.03 | 21.73 | KM Plot |
KIRC | rs13066044 | chr3:48377276 | C/T | 7.57E-6 | 490 | 37.53 | 39.03 | 21.73 | KM Plot |
KIRC | rs13066758 | chr3:48343877 | G/A | 7.42E-6 | 503 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs13067450 | chr3:48337206 | C/T | 4.08E-5 | 505 | 37.6 | 37.77 | 21.12 | KM Plot |
KIRC | rs13068265 | chr3:48301614 | A/C | 1.47E-5 | 500 | 37.73 | 37.47 | 21.12 | KM Plot |
KIRC | rs13069029 | chr3:48355024 | A/G | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs13070210 | chr3:48349503 | G/A | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |